Kundaje, A. : rechercher sur Z-Library

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1

Transparency and reproducibility in artificial intelligence

Haibe-Kains, Benjamin, Adam, George Alexandru, Hosny, Ahmed, Khodakarami, Farnoosh, Waldron, Levi, Wang, Bo, McIntosh, Chris, Goldenberg, Anna, Kundaje, Anshul, Greene, Casey S., Broderick, Tamara, Ho

Journal:

Année:

2020

Fichier:

PDF, 1.16 MB

2020

2

An integrated encyclopedia of DNA elements in the human genome

Dunham, Ian, Kundaje, Anshul, Aldred, Shelley F., Collins, Patrick J., Davis, Carrie A., Doyle, Francis, Epstein, Charles B., Frietze, Seth, Harrow, Jennifer, Kaul, Rajinder, Khatun, Jainab, Lajoie, B

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 2.25 MB

english, 2012

3

Architecture of the human regulatory network derived from ENCODE data

Gerstein, Mark B., Kundaje, Anshul, Hariharan, Manoj, Landt, Stephen G., Yan, Koon-Kiu, Cheng, Chao, Mu, Xinmeng Jasmine, Khurana, Ekta, Rozowsky, Joel, Alexander, Roger, Min, Renqiang, Alves, Pedro,

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 15.53 MB

english, 2012

4

H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency

Benayoun, Bérénice A., Pollina, Elizabeth A., Ucar, Duygu, Mahmoudi, Salah, Karra, Kalpana, Wong, Edith D., Devarajan, Keerthana, Daugherty, Aaron C., Kundaje, Anshul B., Mancini, Elena, Hitz, Benjami

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 3.95 MB

english, 2014

5

Integrative analysis of 111 reference human epigenomes

Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Heravi-Moussavi, Alireza, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ziller, Michael J., Amin, Viren, Whitaker, Jo

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 20.27 MB

english, 2015

6

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

Corces, M Ryan, Buenrostro, Jason D, Wu, Beijing, Greenside, Peyton G, Chan, Steven M, Koenig, Julie L, Snyder, Michael P, Pritchard, Jonathan K, Kundaje, Anshul, Greenleaf, William J, Majeti, Ravindr

Journal:

Nature Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 9.93 MB

english, 2016

7

H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency

Benayoun, Bérénice A., Pollina, Elizabeth A., Ucar, Duygu, Mahmoudi, Salah, Karra, Kalpana, Wong, Edith D., Devarajan, Keerthana, Daugherty, Aaron C., Kundaje, Anshul B., Mancini, Elena, Hitz, Benjami

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2015

8

The Kipoi repository accelerates community exchange and reuse of predictive models for genomics

Avsec, Žiga, Kreuzhuber, Roman, Israeli, Johnny, Xu, Nancy, Cheng, Jun, Shrikumar, Avanti, Banerjee, Abhimanyu, Kim, Daniel S., Beier, Thorsten, Urban, Lara, Kundaje, Anshul, Stegle, Oliver, Gagneur,

Journal:

Nature Biotechnology

Année:

2019

Langue:

english

Fichier:

PDF, 1.59 MB

english, 2019

9

Learning Regulatory Programs That Accurately Predict Differential Expression with MEDUSA

ANSHUL KUNDAJE, STEVE LIANOGLOU, XUEJING LI, DAVID QUIGLEY, MARTA ARIAS, CHRIS H. WIGGINS, LI ZHANG, CHRISTINA LESLIE

Journal:

Annals of the New York Academy of Sciences

Année:

2007

Langue:

english

Fichier:

PDF, 372 KB

english, 2007

10

Effect of cigarette smoking on serum lipid, lipoprotein and apolipoprotein levels in hypertensives receiving β-adrenoreceptor blocking drugs

Ananthakrishnan Ramani, Sudhakar S. Nayak, A. R. Aroor, G. N. Kundaje

Journal:

Indian Journal of Clinical Biochemistry

Année:

1991

Langue:

english

Fichier:

PDF, 291 KB

english, 1991

11

Serum apoproteins A and B and the lecithin: Cholesterol acyl transferase activities in liver cirrhosis and hepatic coma patients

Sudhakar S. Nayak, Ananthakrishnan Ramani, Sreenivas S. Kamath, Ganesh N. Kundaje, Annayya R. Aroor

Journal:

Biochemical Medicine and Metabolic Biology

Année:

1988

Langue:

english

Fichier:

PDF, 401 KB

english, 1988

12

A classification-based framework for predicting and analyzing gene regulatory response

Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chris H Wiggins, Yoav Freund, Christina Leslie

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2006

13

Modeling gene expression using chromatin features in various cellular contexts

Xianjun Dong, Melissa C Greven, Anshul Kundaje, Sarah Djebali, James B Brown, Chao Cheng, Tom R Gingeras, Mark Gerstein, Roderic Guigó, Ewan Birney, Zhiping Weng

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 988 KB

english, 2012

14

Diagnostic significance of estimation of serum apolipoprotein A along with α-fetoprotein in alcoholic cirrhosis and hepatocellular carcinoma patients

Sudhakar S. Nayak, Sreenivas S. Kamath, Ganesh N. Kundaje, Annayya R. Aroor

Journal:

Clinica Chimica Acta

Année:

1988

Langue:

english

Fichier:

PDF, 569 KB

english, 1988

15

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Kevin Y Yip, Chao Cheng, Nitin Bhardwaj, James B Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter Bickel, Michael Snyder, Mark Gerstein

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2012

16

Extensive Variation in Chromatin States Across Humans

Kasowski, M., Kyriazopoulou-Panagiotopoulou, S., Grubert, F., Zaugg, J. B., Kundaje, A., Liu, Y., Boyle, A. P., Zhang, Q. C., Zakharia, F., Spacek, D. V., Li, J., Xie, D., Olarerin-George, A., Steinme

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 5.44 MB

english, 2013

17

Hemorheologic Approach in the Treatment of Diabetic Foot Ulcers

Ramani, A., Kundaje, G.N., Nayak, M.N.

Journal:

Année:

1993

Langue:

english

Fichier:

PDF, 293 KB

english, 1993

18

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease

Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A.,

Journal:

Proceedings of the National Academy of Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 536 KB

english, 2014

19

77 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, Xin, Whitfield, Troy W., Greven, Melissa C., Pierce, Brian G., Dong, Xianjun, Kundaje, Anshul, Cheng, Yong, Rando, Oliver J., Birney, Ewan, Myers, Richard

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2013

Langue:

english

Fichier:

PDF, 64 KB

english, 2013

20

STAT3 Targets Suggest Mechanisms of Aggressive Tumorigenesis in Diffuse Large B-Cell Lymphoma

Hardee, J., Ouyang, Z., Zhang, Y., Kundaje, A., Lacroute, P., Snyder, M.

Journal:

G3 Genes|Genome|Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2013

21

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, M

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 16.39 MB

english, 2014

22

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Kundaje, A., Kyriazopoulou-Panagiotopoulou, S., Libbrecht, M., Smith, C. L., Raha, D., Winters, E. E., Johnson, S. M., Snyder, M., Batzoglou, S., Sidow, A.

Journal:

Genome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.53 MB

english, 2012

23

Integrative annotation of chromatin elements from ENCODE data

Hoffman, M. M., Ernst, J., Wilder, S. P., Kundaje, A., Harris, R. S., Libbrecht, M., Giardine, B., Ellenbogen, P. M., Bilmes, J. A., Birney, E., Hardison, R. C., Dunham, I., Kellis, M., Noble, W. S.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.08 MB

english, 2013

24

Combining Sequence and Time Series Expression Data to Learn Transcriptional Modules

Kundaje, A., Middendorf, M., Feng Gao,, Wiggins, C., Leslie, C.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 568 KB

english, 2005

25

Long noncoding RNAs are rarely translated in two human cell lines

Banfai, B., Jia, H., Khatun, J., Wood, E., Risk, B., Gundling, W. E., Kundaje, A., Gunawardena, H. P., Yu, Y., Xie, L., Krajewski, K., Strahl, B. D., Chen, X., Bickel, P., Giddings, M. C., Brown, J. B

Journal:

Genome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2012

26

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B. E., Bickel, P., Brown, J. B., Cayting, P., Chen, Y., DeSalvo, G., Epstein, C., Fisher-Aylor, K. I., E

Journal:

Genome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.58 MB

english, 2012

27

Defining functional DNA elements in the human genome

Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A.,

Journal:

Proceedings of the National Academy of Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 864 KB

english, 2014

28

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Wang, J., Zhuang, J., Iyer, S., Lin, X., Whitfield, T. W., Greven, M. C., Pierce, B. G., Dong, X., Kundaje, A., Cheng, Y., Rando, O. J., Birney, E., Myers, R. M., Noble, W. S., Snyder, M., Weng, Z.

Journal:

Genome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2012

29

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

Gjoneska, Elizabeta, Pfenning, Andreas R., Mathys, Hansruedi, Quon, Gerald, Kundaje, Anshul, Tsai, Li-Huei, Kellis, Manolis

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2015

30

Electrocardiographic Abnormalities in Cerebrovascular Accidents

Ramani, A., Shetty, U., Kundaje, G.N.

Journal:

Année:

1990

Langue:

english

Fichier:

PDF, 407 KB

english, 1990

31

Reassessment of Piwi Binding to the Genome and Piwi Impact on RNA Polymerase II Distribution

Lin, Haifan, Chen, Mengjie, Kundaje, Anshul, Valouev, Anton, Yin, Hang, Liu, Na, Neuenkirchen, Nils, Zhong, Mei, Snyder, Michael

Journal:

Developmental Cell

Année:

2015

Langue:

english

Fichier:

PDF, 559 KB

english, 2015

32

Ultrasound-guided needle aspiration of amoebic liver abscess.

Ramani, A., Ramani, R., Kumar, M. S., Lakhkar, B. N., Kundaje, G. N.

Journal:

Postgraduate Medical Journal

Année:

1993

Langue:

english

Fichier:

PDF, 330 KB

english, 1993

33

Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster

Slattery, M., Ma, L., Spokony, R. F., Arthur, R. K., Kheradpour, P., Kundaje, A., Negre, N., Crofts, A., Ptashkin, R., Zieba, J., Ostapenko, A., Suchy, S., Victorsen, A., Jameel, N., Grundstad, A. J.,

Journal:

Genome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2014

34

Statistical analysis of MPSS measurements: Application to the study of LPS-activated macrophage gene expression

Stolovitzky, G. A., Kundaje, A., Held, G. A., Duggar, K. H., Haudenschild, C. D., Zhou, D., Vasicek, T. J., Smith, K. D., Aderem, A., Roach, J. C.

Journal:

Proceedings of the National Academy of Sciences

Année:

2005

Langue:

english

Fichier:

PDF, 469 KB

english, 2005

35

Transcription Factors Bind Negatively Selected Sites within Human mtDNA Genes

Blumberg, A., Sri Sailaja, B., Kundaje, A., Levin, L., Dadon, S., Shmorak, S., Shaulian, E., Meshorer, E., Mishmar, D.

Journal:

Genome Biology and Evolution

Année:

2014

Langue:

english

Fichier:

PDF, 904 KB

english, 2014

36

Large-Scale Quality Analysis of Published ChIP-seq Data

Marinov, G. K., Kundaje, A., Park, P. J., Wold, B. J.

Journal:

G3 Genes|Genome|Genetics

Année:

2014

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2014

37

Comparison of safety, efficacy, and cost effectiveness of benzyl benzoate, permethrin, and ivermectin in patients of scabies

Thawani, VijayR, Mali, SmitaN, Gharpure, KundaJ, Shingade, VaishaliP, Dakhale, GaneshN, Bachewar, NarendraP

Journal:

Indian Journal of Pharmacology

Année:

2009

Langue:

english

Fichier:

PDF, 178 KB

english, 2009

38

Impact of medicine-related information on medicine purchase and use by literate consumers

Thawani, VijayR, Gharpure, KundaJ, Sontakke, SmitaD

Journal:

Indian Journal of Pharmacology

Année:

2014

Langue:

english

Fichier:

PDF, 417 KB

english, 2014

39

A Predictive Model of the Oxygen and Heme Regulatory Network in Yeast

Kundaje, Anshul, Xin, Xiantong, Lan, Changgui, Lianoglou, Steve, Zhou, Mei, Zhang, Li, Leslie, Christina, Sauro, Herbert M.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2008

40

Characterization of TCF21 Downstream Target Regions Identifies a Transcriptional Network Linking Multiple Independent Coronary Artery Disease Loci

Sazonova, Olga, Zhao, Yuqi, Nürnberg, Sylvia, Miller, Clint, Pjanic, Milos, Castano, Victor G., Kim, Juyong B., Salfati, Elias L., Kundaje, Anshul B., Bejerano, Gill, Assimes, Themistocles, Yang, Xia,

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2015

41

Predicting genetic regulatory response using classification

Middendorf, M., Kundaje, A., Wiggins, C., Freund, Y., Leslie, C.

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 256 KB

english, 2004

42

Linking disease associations with regulatory information in the human genome

Schaub, M. A., Boyle, A. P., Kundaje, A., Batzoglou, S., Snyder, M.

Journal:

Genome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2012

43

Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution

Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, M

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 48 KB

english, 2015

44

An Arntl2-Driven Secretome Enables Lung Adenocarcinoma Metastatic Self-Sufficiency

Brady, Jennifer J., Chuang, Chen-Hua, Greenside, Peyton G., Rogers, Zoë N., Murray, Christopher W., Caswell, Deborah R., Hartmann, Ursula, Connolly, Andrew J., Sweet-Cordero, E. Alejandro, Kundaje, An

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 3.16 MB

english, 2016

45

Rosai-Dorfman disease of the subglottis

Hazarika, Produl, Nayak, DeepakR., Balakrishnan, R., Kundaje, HarishG., Rao, P. Lakshmi

Journal:

Journal of Laryngology & Otology

Année:

2000

Langue:

english

Fichier:

PDF, 468 KB

english, 2000

46

Osteolipoma of the skull base

Hazarika, P., Pujary, Kailesh, Kundaje, Harish G., Rao, P. Lakshmi

Journal:

Journal of Laryngology & Otology

Année:

2001

Langue:

english

Fichier:

PDF, 514 KB

english, 2001

47

Tracheo-innominate artery fistula: a rare complication in a laryngectomized patient

Hazarika, Produl, Kamath, Ganesh, Balakrishnan, R., Girish, Raj, Harish G., Kundaje

Journal:

Journal of Laryngology & Otology

Année:

2002

Langue:

english

Fichier:

PDF, 106 KB

english, 2002

48

Spectrogram Analysis of Genomes

Sussillo, David, Kundaje, Anshul, Anastassiou, Dimitris

Journal:

EURASIP Journal on Advances in Signal Processing

Année:

2004

Langue:

english

Fichier:

PDF, 5.47 MB

english, 2004

49

Characterization of the direct targets of FOXO transcription factors throughout evolution

Webb, Ashley E., Kundaje, Anshul, Brunet, Anne

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2016

50

An atlas of transcriptional, chromatin accessibility, and surface marker changes in human mesoderm development

Koh, Pang Wei, Sinha, Rahul, Barkal, Amira A., Morganti, Rachel M., Chen, Angela, Weissman, Irving L., Ang, Lay Teng, Kundaje, Anshul, Loh, Kyle M.

Journal:

Scientific Data

Année:

2016

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2016